[9434] | 1 | /// \ingroup newmat
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| 2 | ///@{
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| 3 |
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| 4 | /// \file cholesky.cpp
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| 5 | /// Cholesky decomposition.
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| 6 | /// Cholesky decomposition of symmetric and band symmetric matrices,
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| 7 | /// update, downdate, manipulate a Cholesky decomposition
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| 8 |
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| 9 |
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| 10 | // Copyright (C) 1991,2,3,4: R B Davies
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| 11 |
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| 12 | #define WANT_MATH
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| 13 | //#define WANT_STREAM
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| 14 |
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| 15 | #include "include.h"
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| 16 |
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| 17 | #include "newmat.h"
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| 18 | #include "newmatrm.h"
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| 19 |
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| 20 | #ifdef use_namespace
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| 21 | namespace NEWMAT {
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| 22 | #endif
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| 23 |
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| 24 | #ifdef DO_REPORT
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| 25 | #define REPORT { static ExeCounter ExeCount(__LINE__,14); ++ExeCount; }
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| 26 | #else
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| 27 | #define REPORT {}
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| 28 | #endif
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| 29 |
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| 30 | /********* Cholesky decomposition of a positive definite matrix *************/
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| 31 |
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| 32 | // Suppose S is symmetrix and positive definite. Then there exists a unique
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| 33 | // lower triangular matrix L such that L L.t() = S;
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| 34 |
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| 35 |
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| 36 | ReturnMatrix Cholesky(const SymmetricMatrix& S)
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| 37 | {
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| 38 | REPORT
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| 39 | Tracer trace("Cholesky");
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| 40 | int nr = S.Nrows();
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| 41 | LowerTriangularMatrix T(nr);
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| 42 | Real* s = S.Store(); Real* t = T.Store(); Real* ti = t;
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| 43 | for (int i=0; i<nr; i++)
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| 44 | {
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| 45 | Real* tj = t; Real sum; int k;
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| 46 | for (int j=0; j<i; j++)
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| 47 | {
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| 48 | Real* tk = ti; sum = 0.0; k = j;
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| 49 | while (k--) { sum += *tj++ * *tk++; }
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| 50 | *tk = (*s++ - sum) / *tj++;
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| 51 | }
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| 52 | sum = 0.0; k = i;
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| 53 | while (k--) { sum += square(*ti++); }
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| 54 | Real d = *s++ - sum;
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| 55 | if (d<=0.0) Throw(NPDException(S));
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| 56 | *ti++ = sqrt(d);
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| 57 | }
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| 58 | T.release(); return T.for_return();
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| 59 | }
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| 60 |
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| 61 | ReturnMatrix Cholesky(const SymmetricBandMatrix& S)
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| 62 | {
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| 63 | REPORT
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| 64 | Tracer trace("Band-Cholesky");
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| 65 | int nr = S.Nrows(); int m = S.lower_val;
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| 66 | LowerBandMatrix T(nr,m);
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| 67 | Real* s = S.Store(); Real* t = T.Store(); Real* ti = t;
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| 68 |
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| 69 | for (int i=0; i<nr; i++)
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| 70 | {
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| 71 | Real* tj = t; Real sum; int l;
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| 72 | if (i<m) { REPORT l = m-i; s += l; ti += l; l = i; }
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| 73 | else { REPORT t += (m+1); l = m; }
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| 74 |
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| 75 | for (int j=0; j<l; j++)
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| 76 | {
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| 77 | Real* tk = ti; sum = 0.0; int k = j; tj += (m-j);
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| 78 | while (k--) { sum += *tj++ * *tk++; }
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| 79 | *tk = (*s++ - sum) / *tj++;
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| 80 | }
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| 81 | sum = 0.0;
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| 82 | while (l--) { sum += square(*ti++); }
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| 83 | Real d = *s++ - sum;
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| 84 | if (d<=0.0) Throw(NPDException(S));
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| 85 | *ti++ = sqrt(d);
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| 86 | }
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| 87 |
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| 88 | T.release(); return T.for_return();
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| 89 | }
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| 90 |
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| 91 |
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| 92 |
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| 93 |
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| 94 | // Contributed by Nick Bennett of Schlumberger-Doll Research; modified by RBD
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| 95 |
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| 96 | // The enclosed routines can be used to update the Cholesky decomposition of
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| 97 | // a positive definite symmetric matrix. A good reference for this routines
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| 98 | // can be found in
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| 99 | // LINPACK User's Guide, Chapter 10, Dongarra et. al., SIAM, Philadelphia, 1979
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| 100 |
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| 101 | // produces the Cholesky decomposition of A + x.t() * x where A = chol.t() * chol
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| 102 | void update_Cholesky(UpperTriangularMatrix &chol, RowVector x)
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| 103 | {
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| 104 | int nc = chol.Nrows();
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| 105 | ColumnVector cGivens(nc); cGivens = 0.0;
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| 106 | ColumnVector sGivens(nc); sGivens = 0.0;
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| 107 |
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| 108 | for(int j = 1; j <= nc; ++j) // process the jth column of chol
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| 109 | {
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| 110 | // apply the previous Givens rotations k = 1,...,j-1 to column j
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| 111 | for(int k = 1; k < j; ++k)
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| 112 | GivensRotation(cGivens(k), sGivens(k), chol(k,j), x(j));
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| 113 |
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| 114 | // determine the jth Given's rotation
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| 115 | pythag(chol(j,j), x(j), cGivens(j), sGivens(j));
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| 116 |
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| 117 | // apply the jth Given's rotation
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| 118 | {
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| 119 | Real tmp0 = cGivens(j) * chol(j,j) + sGivens(j) * x(j);
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| 120 | chol(j,j) = tmp0; x(j) = 0.0;
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| 121 | }
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| 122 |
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| 123 | }
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| 124 |
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| 125 | }
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| 126 |
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| 127 |
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| 128 | // produces the Cholesky decomposition of A - x.t() * x where A = chol.t() * chol
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| 129 | void downdate_Cholesky(UpperTriangularMatrix &chol, RowVector x)
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| 130 | {
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| 131 | int nRC = chol.Nrows();
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| 132 |
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| 133 | // solve R^T a = x
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| 134 | LowerTriangularMatrix L = chol.t();
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| 135 | ColumnVector a(nRC); a = 0.0;
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| 136 | int i, j;
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| 137 |
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| 138 | for (i = 1; i <= nRC; ++i)
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| 139 | {
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| 140 | // accumulate subtr sum
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| 141 | Real subtrsum = 0.0;
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| 142 | for(int k = 1; k < i; ++k) subtrsum += a(k) * L(i,k);
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| 143 |
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| 144 | a(i) = (x(i) - subtrsum) / L(i,i);
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| 145 | }
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| 146 |
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| 147 | // test that l2 norm of a is < 1
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| 148 | Real squareNormA = a.SumSquare();
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| 149 | if (squareNormA >= 1.0)
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| 150 | Throw(ProgramException("downdate_Cholesky() fails", chol));
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| 151 |
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| 152 | Real alpha = sqrt(1.0 - squareNormA);
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| 153 |
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| 154 | // compute and apply Givens rotations to the vector a
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| 155 | ColumnVector cGivens(nRC); cGivens = 0.0;
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| 156 | ColumnVector sGivens(nRC); sGivens = 0.0;
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| 157 | for(i = nRC; i >= 1; i--)
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| 158 | alpha = pythag(alpha, a(i), cGivens(i), sGivens(i));
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| 159 |
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| 160 | // apply Givens rotations to the jth column of chol
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| 161 | ColumnVector xtilde(nRC); xtilde = 0.0;
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| 162 | for(j = nRC; j >= 1; j--)
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| 163 | {
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| 164 | // only the first j rotations have an affect on chol,0
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| 165 | for(int k = j; k >= 1; k--)
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| 166 | GivensRotation(cGivens(k), -sGivens(k), chol(k,j), xtilde(j));
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| 167 | }
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| 168 | }
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| 169 |
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| 170 |
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| 171 |
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| 172 | // produces the Cholesky decomposition of EAE where A = chol.t() * chol
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| 173 | // and E produces a RIGHT circular shift of the rows and columns from
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| 174 | // 1,...,k-1,k,k+1,...l,l+1,...,p to
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| 175 | // 1,...,k-1,l,k,k+1,...l-1,l+1,...p
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| 176 | void right_circular_update_Cholesky(UpperTriangularMatrix &chol, int k, int l)
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| 177 | {
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| 178 | int nRC = chol.Nrows();
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| 179 | int i, j;
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| 180 |
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| 181 | // I. compute shift of column l to the kth position
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| 182 | Matrix cholCopy = chol;
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| 183 | // a. grab column l
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| 184 | ColumnVector columnL = cholCopy.Column(l);
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| 185 | // b. shift columns k,...l-1 to the RIGHT
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| 186 | for(j = l-1; j >= k; --j)
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| 187 | cholCopy.Column(j+1) = cholCopy.Column(j);
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| 188 | // c. copy the top k-1 elements of columnL into the kth column of cholCopy
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| 189 | cholCopy.Column(k) = 0.0;
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| 190 | for(i = 1; i < k; ++i) cholCopy(i,k) = columnL(i);
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| 191 |
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| 192 | // II. determine the l-k Given's rotations
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| 193 | int nGivens = l-k;
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| 194 | ColumnVector cGivens(nGivens); cGivens = 0.0;
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| 195 | ColumnVector sGivens(nGivens); sGivens = 0.0;
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| 196 | for(i = l; i > k; i--)
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| 197 | {
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| 198 | int givensIndex = l-i+1;
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| 199 | columnL(i-1) = pythag(columnL(i-1), columnL(i),
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| 200 | cGivens(givensIndex), sGivens(givensIndex));
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| 201 | columnL(i) = 0.0;
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| 202 | }
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| 203 | // the kth entry of columnL is the new diagonal element in column k of cholCopy
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| 204 | cholCopy(k,k) = columnL(k);
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| 205 |
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| 206 | // III. apply these Given's rotations to subsequent columns
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| 207 | // for columns k+1,...,l-1 we only need to apply the last nGivens-(j-k) rotations
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| 208 | for(j = k+1; j <= nRC; ++j)
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| 209 | {
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| 210 | ColumnVector columnJ = cholCopy.Column(j);
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| 211 | int imin = nGivens - (j-k) + 1; if (imin < 1) imin = 1;
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| 212 | for(int gIndex = imin; gIndex <= nGivens; ++gIndex)
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| 213 | {
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| 214 | // apply gIndex Given's rotation
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| 215 | int topRowIndex = k + nGivens - gIndex;
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| 216 | GivensRotationR(cGivens(gIndex), sGivens(gIndex),
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| 217 | columnJ(topRowIndex), columnJ(topRowIndex+1));
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| 218 | }
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| 219 | cholCopy.Column(j) = columnJ;
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| 220 | }
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| 221 |
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| 222 | chol << cholCopy;
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| 223 | }
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| 224 |
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| 225 |
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| 226 |
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| 227 | // produces the Cholesky decomposition of EAE where A = chol.t() * chol
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| 228 | // and E produces a LEFT circular shift of the rows and columns from
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| 229 | // 1,...,k-1,k,k+1,...l,l+1,...,p to
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| 230 | // 1,...,k-1,k+1,...l,k,l+1,...,p to
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| 231 | void left_circular_update_Cholesky(UpperTriangularMatrix &chol, int k, int l)
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| 232 | {
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| 233 | int nRC = chol.Nrows();
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| 234 | int i, j;
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| 235 |
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| 236 | // I. compute shift of column k to the lth position
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| 237 | Matrix cholCopy = chol;
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| 238 | // a. grab column k
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| 239 | ColumnVector columnK = cholCopy.Column(k);
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| 240 | // b. shift columns k+1,...l to the LEFT
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| 241 | for(j = k+1; j <= l; ++j)
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| 242 | cholCopy.Column(j-1) = cholCopy.Column(j);
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| 243 | // c. copy the elements of columnK into the lth column of cholCopy
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| 244 | cholCopy.Column(l) = 0.0;
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| 245 | for(i = 1; i <= k; ++i)
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| 246 | cholCopy(i,l) = columnK(i);
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| 247 |
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| 248 | // II. apply and compute Given's rotations
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| 249 | int nGivens = l-k;
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| 250 | ColumnVector cGivens(nGivens); cGivens = 0.0;
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| 251 | ColumnVector sGivens(nGivens); sGivens = 0.0;
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| 252 | for(j = k; j <= nRC; ++j)
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| 253 | {
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| 254 | ColumnVector columnJ = cholCopy.Column(j);
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| 255 |
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| 256 | // apply the previous Givens rotations to columnJ
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| 257 | int imax = j - k; if (imax > nGivens) imax = nGivens;
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| 258 | for(int i = 1; i <= imax; ++i)
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| 259 | {
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| 260 | int gIndex = i;
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| 261 | int topRowIndex = k + i - 1;
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| 262 | GivensRotationR(cGivens(gIndex), sGivens(gIndex),
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| 263 | columnJ(topRowIndex), columnJ(topRowIndex+1));
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| 264 | }
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| 265 |
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| 266 | // compute a new Given's rotation when j < l
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| 267 | if(j < l)
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| 268 | {
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| 269 | int gIndex = j-k+1;
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| 270 | columnJ(j) = pythag(columnJ(j), columnJ(j+1), cGivens(gIndex),
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| 271 | sGivens(gIndex));
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| 272 | columnJ(j+1) = 0.0;
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| 273 | }
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| 274 |
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| 275 | cholCopy.Column(j) = columnJ;
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| 276 | }
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| 277 |
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| 278 | chol << cholCopy;
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| 279 |
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| 280 | }
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| 281 |
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| 282 |
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| 283 |
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| 284 |
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| 285 | #ifdef use_namespace
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| 286 | }
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| 287 | #endif
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| 288 |
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| 289 | ///@}
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